Science Gateways Listing

This page lists all of the current science gateways. The list membership changes occasionally, as new projects join the community. Find the related science domains and links to the gateway home pages within the table below.

Key Points
Currently there are 34 Gateways listed
Contact Information
XSEDE Science Gateways Expert
Science Gateways Community Institute

EDGE-Bioinformatics-Gateway

PI
Patrick Chain
Field of Science
Biological Sciences
Relevant Link(s)
Portal Homepage
Additional Contact(s)
Mark Flynn Elais Player

Description: The EDGE Bioinformatics Science Gateway was developed to help biologists, educators and public-health professionals process Next Generation Sequencing data (in the form of raw FASTQ files), even if they have little to no bioinformatics expertise. EDGE is a highly integrated and interactive web-based platform that is capable of running many of the standard analyses that biologists require for viral, bacterial/archaeal, and metagenomic samples. EDGE provides the following analytical workflows: pre-processing, assembly and annotation, reference-based analysis, taxonomy classification, phylogenetic analysis, and PCR analysis. EDGE provides an intuitive web-based interface for user input, allows users to visualize and interact with selected results (e.g. JBrowse genome browser), and generates a final detailed PDF report. Results in the form of tables, text files, graphic files, and PDFs can be downloaded. A user management system allows tracking of an individual’s EDGE runs, along with the ability to share, post publicly, delete, export or archive their results.