Science Gateways Listing

This page lists all of the current science gateways. The list membership changes occasionally, as new projects join the community. Find the related science domains and links to the gateway home pages within the table below.

Key Points
Currently there are 34 Gateways listed
Contact Information
XSEDE Science Gateways Expert
Science Gateways Community Institute

GenePattern Server

Acronym
genepattern
PI
Jill Mesirov
Field of Science
Biological Sciences
Relevant Link(s)
Portal Homepage
Additional Contact(s)
Michael Reich Phil Blood

Description: GenePattern, www.genepattern.org, is a powerful genomic analysis platform that provides access to hundreds of tools for gene expression analysis, proteomics, SNP analysis, flow cytometry, RNA-seq analysis, and common data processing tasks. A web-based interface provides easy access to these tools and allows the creation of multi-step analysis pipelines that enable reproducible in silico research. We propose to deploy a GenePattern server on XSEDE infrastructure to provide advanced genomic methods and workflows on high-performance compute architecture. This project will help to commoditize the analysis of very large genomic datasets and disseminate both novel approaches and industry standard methods to a wide audience of researchers.