Extended Collaborative Support Service (ECSS)

ECSS Projects

Here is a list of ECSS Projects broken up by: Research Teams, Community Codes, Scientific Gateways, and Past Project

Last Updated June 14, 2016

Research Teams

Project Name PI Name PI Institution Consultant Name Allocation End
Quantum transport simulation with inelastic exciton-phonon and exciton-plasmon scattering effects in graphene and carbon nanodevices Mark A Jack Florida a&M University Jakowski, Jacek 5/8/15
Constructing Nanosecond Level Snapshot of Financial Markets Using Supercomputers Mao Ye  University of Illinois at Urbana-Champaign  O'Neal, David,Schmidt, Drew 12/31/15
Decadal and multidecadal ocean memory in the eddying regim Paola Cessi Scripps Institution of Oceanography Koesterke, Lars 12/31/15
Design of Experiments and In-Situ Big Data Analytics for Energy Efficient Buildings Joshua New Oak Ridge National Laboratory Patel, Pragnesh,Wong, Kwai 12/31/15
Direct numerical simulation of droplet-laden homogeneous isotropic turbulence - Y3 Antonino Ferrante University of Washington Adams, Darren 12/31/15
In-silico hemodynamic feasibility evaluation of a continuous flow ascending aortic blood pump for optimal transcatheter deployment Prahlad Menon Gopalakrishna  Carnegie Mellon University Bowen, Anne 12/31/15
test for Carlos Karla Gendler UT Rosales, Carlos 12/31/15
Numerical Modeling of High-Impact Weather: Winter Snowstorms, Severe Thunderstorms and Tornadoes Brian F Jewett University of Illinois at Urbana-Champaign Huang, Lei,O'Neal, David 3/31/16
Theoretical studies of photoinitiated processes Spiridoula Matsika Temple University O'Neal, David 3/31/16
Visualization Tools for 3-Dimensional Spectroscopic Histological Microscopy Rohit Bhargava University of Illinois at Urbana-Champaign Bock, David 4/1/16
Analyzing the Influence of Socioeconomic Factors on Online Game Advancement, Y2 Min Zhan University of Illinois at Urbana-Champaign Cai, Dora 5/21/16
High performance computing and visualization to enhance the use of advanced transportation models in practice Natalia Ruiz Juri University of Texas at Austin Gupta, Amit 6/1/16
Stellar Turbulence on Xeon Phi coprocessors Casey Adam Meakin Los Alamos National Laboratory Koesterke, Lars 6/2/16
Ab initio study on the glycosidation of 5-Fluorouracil (5-FU) Yigui Wang Southern Connecticut State University Choi, DJ 6/24/16
Computational fluid-structure interaction of biological systems, v2 Haoxiang Luo Vanderbilt University Liu, Hang 6/30/16
Large eddy simulations of extended wind-farms Charles Meneveau Johns Hopkins University Adams, Darren,Bock, David 6/30/16
Mining, Coordinating and Visualizing Curricula in STEM and Social Science Sharon Tettegah University of Illinois at Urbana-Champaign Patel, Pragnesh 6/30/16
Quantum transport simulation with multi-electron corrections to electron-phonon scattering in carbon nanoring devices, y2 Mark A Jack Florida A&M University Jakowski, Jacek,Wang, Yang 6/30/16
Statistical Analysis for Partially-Observed Markov Processes with Marked Point Process Observations, y3 Yong Zeng University of Missouri, Kansas City Yin, Junqi 6/30/16
Visualizing Topic Models about African American Women’s Everyday Experiences and Standpoints Ruby Mendenhall University of Illinois at Urbana-Champaign Vanmoer, Mark 6/30/16
XSEDE: Prediction and Control of Compressible Turbulent Flows, y4 Daniel Joseph Bodony University of Illinois at Urbana-Champaign Wilson, Luke 6/30/16
Image Analysis of Rural Photography Elizabeth Wuerffel Valparaiso University Craig, Alan,Rodriguez, Paul,Slavenas, Marcus 7/9/16
Investigating the relationship between Identity Politics and Discourse using visualizations Nicole Brown National Center for Supercomputing Applications Rodriguez, Paul,Vanmoer, Mark 9/27/16
Optimization and uncertainty quantification in cardiovascular flow simulations using high performance computing Alison Lesley Marsden Stanford University Wong, Kwai 9/30/16
Structural Estimation of Equilibrium Models Chao Fu University of Wisconsin-Madison Su, Shiquan,Yin, Junqi 9/30/16
Decomposing Bodies Alison Langmead University of Pittsburgh Craig, Alan,Puthanveetil, Sandeep,Rodriguez, Paul 11/3/16
Disclosure Scriptability Matthew DeAngelis Georgia State University Wong, Kwai 12/8/16
DISSCO, a Digital Instrument for Sound Synthesis and Composition Sever Tipei University of Illinois at Urbana-Champaign   12/13/16
Allocation Request on Blacklight and Bridges for SNP Detection in Large Metagenomics Samples, y3 Ping Ma University of Georgia Blood, Phillip 12/31/16
Constructing Nanosecond Level Snapshot of Financial Markets Using Supercomputers, y3 Mao Ye University of Illinois at Urbana-Champaign Huang, Lei,O'Neal, David 12/31/16
DNS of droplet-laden isotropic turbulence, y4 Antonino Ferrante University of Washington Adams, Darren 12/31/16
Renewal of: High Performance Computing Resources in Support of Spatiotemporal Relational Data Mining for Anticipation of Severe Weather Amy McGovern University of Oklahoma Abram, Greg,Foss, Greg 12/31/16
Simulating collisions of white dwarfs as a primary channel for type Ia supernovae Doron Kushnir Institute for Advanced Study Bock, David 12/31/16
Simulation for 2D Semiconductor with Parallel Uniform and Adaptive Multigrid Method for Phase Field Crystal Models Zhen Guan University of California, Irvine Bock, David,Pamidighantam, Sudhakar 12/31/16
Six Degrees of Francis Bacon Christopher Norton Warren Carnegie Mellon University Costa, Rick,Walling, David 12/31/16
Dynamic interactions between small molecule compounds and their binding site within the SK/IK channel protein complex Ji-fang Zhang Thomas Jefferson University Liu, Si 1/20/17
What is Entrepreneurship?: Multiple Perspectives in Higher Education Paul J Magelli University of Illinois at Urbana-Champaign Chourasia, Amit,Patel, Pragnesh 3/2/17
Research Inititiation Awards: Globalization Strategy and Parallelism in PDE-constrained optimization for inverse source problems Widodo Samyono Jarvis Christian College Eijkhout, Victor 3/22/17
Computational studies of earthquake hazards: effects of complex geologic structure and topography on seismic wave propagation and quantification of uncertainties in seismic source models and probabilistic seismic-hazard Morgan Paul Moschetti US Geological Survey Cui, Yifeng,Koesterke, Lars 3/31/17
Direct Numerical Simulation of Hypersonic Boundary Layer Transition Xiaolin Zhong University of California, Los Angeles   3/31/17
Future impacts of climate change on the availability of suitable habitat for the North American flora Charles George Willis Harvard University Rynge, Mats 3/31/17
Hydrological model development and application for a refined understanding of Arctic hydrology Anna Katarina Liljedahl University of Alaska, Fairbanks Crosby, Lonnie 3/31/17
Improving Ocean Currents, Storm Surge, and Tide Modeling in Puerto Rico and the U.S. Virgin Islands: Extending the Computational Capabilities of the Caribbean Coastal Ocean Observing System Juan Gonzalez nivrsity of Puerto Rico at Mayaguez (UPR-RUM)   3/31/17
Improving Seasonal Prediction of the Indo-Pacific SST and Indian Monsoon with Multiple Ocean Analyses Ensemble Bohua Huang George Mason University   3/31/17
Investigating 4-D Dynamics of Subduction and Continental Evolution using Adjoint Convection Models Lijun Liu University of Illinois at Urbana-Champaign   3/31/17
Investigating morphology evolution in thin-film polymer blends Baskar Ganapathysubramanian Iowa State University Budiardja, Reuben,Gomez, Roberto,Vanmoer, Mark 3/31/17
Large-eddy simulations of pulverized coal combustion Xinyu Zhao University of Connecticut   3/31/17
Laser-based Structural Sensing and Damage Assessment Jerome F. Hajjar Northeastern University Choi, DJ 3/31/17
Molecular Dynameomics Valerie Daggett University of Washington   3/31/17
Multi-Physics Computational Modeling of Cardiac Flows and Heart Murmurs Using a Parallelized Immersed Boundary Solver Rajat Mittal John Hopkins University   3/31/17
Numerical Modeling of High-Impact Weather: Severe Storms, Tornadoes and Winter Cyclones Brian F Jewett University of Illinois at Urbana-Champaign O'Neal, David 3/31/17
Simulating climate-environment-human interactions in coastal South Africa Curtis Marean Arizona State University O'Neal, David 3/31/17
Large Scale First Principles Study of Anderson Localization Mark Jarrell Louisiana State University Wang, Yang 4/11/17
Machine Assisted Rhetorical Analysis James Ian Wynn Carnegie Mellon University   5/17/17


Community Codes:

Project Name PI Name PI Institution Consultant Name Allocation End
Insight into biomolecular structure, dynamics, interactions and energetics from simulation: Finding and exposing problems in the methods and force fields Thomas Cheatham University of Utah Bowen, Anne,Gomez, Antonio 12/31/15
Simulating glacial climate in coastal South Africa: Developing the climate parameters to model a paleoscape during modern human origins  Curtis Marean Arizona State University O'Neal, David 3/31/16
Optimizing the Multi-State Modified Embedded Atom Method Code Addon for LAMMPS on Stampede Srinivasan Srivilliputhur University of North Texas   5/23/16
HPDBSCAN John Cazes University of Texas   6/30/16
Predictability and Data Assimilation of Severe Weather and Tropical Cyclones Fuqing Zhang Pennsylvania State University Eijkhout, Victor 6/30/16
National Flood Interoperability Experiment (NFIE) David Maidment University of Texas at Austin Liu, Si,Liu, Yan 8/17/16
Calculation of Sensitivity Coefficients for Individual Emissions Sources from Three Major Source Sectors in the Continental U.S. using CMAQ-DDM/3D Sarav Arunachalam University of North Carolina, Chapel Hill Evans, Todd 9/30/16
Measuring the Sensitivity of LIGO's Search for Stellar-Mass Coalescing Compact Object Binaries Duncan Brown Syracuse University Pekurovsky, Dmitry 9/30/16
Image Analysis of fMRI Data for Medical Applications Frank Michael Skidmore University of Alabama, Birmingham Brook, Glenn,Burdyshaw, Chad,Horton, Mitch,Yin, Junqi 11/3/16
Adaptive Finite-element Simulations of Complex Industrial Flow Problems Cameron Walter Smith Rensselaer Polytechnic Institute Huang, Lei 12/31/16
Genome Assembly and Annotation of Red Abalone, Yellowtail, Soybean Cyst Nematode and Spiny Softshell Turtle, y2 Andrew J Severin Iowa State University O'Neal, David 12/31/16
Multiscale Climate and Earth System Modeling, y5 Yang Zhang North Carolina State University   12/31/16
Preparing for Checkpoint-Restart in the Exascale Generation Gene Cooperman Northeastern University Vienne, Jerome 12/31/16
Numerical Methods and Models Using Stochastic (Partial) Differential Equations in Biology Christopher Vincent Rackauckas University of California, Irvine Choi, DJ 2/16/17
Finding Real Differences Between Semi-supervised Learning Algorithms Using PJ2 George Rudolph The Citadel Vienne, Jerome 3/16/17
Study of Mechanotransduction Through Proteins Via Molecular Dynamics Simulations Tess J Moon University of Texas at Austin Huang, Lei 3/22/17
Bioinformatics Pipeline and Infrastructure Development for Cancer Genomics Uma Chandran University of Pittsburgh Ropelewski, Alex 3/31/17
Optoelectronic Properties of Dilute Germanium Carbides Mark Wistey University of Notre Dame Wang, Yang 3/31/17


Scientific Gateways:

Project Name PI Name PI Institution Consultant Name Allocation End
The Galaxy XSEDE Gateway James Taylor  Johns Hopkins University  Blood, Phillip 12/31/15
Simulocean Gateway Jian Tao Louisiana State University Rynge, Mats 4/28/16
Gateway-based flow simulations for remote users Arne J. Pearlstein University of Illinois at Urbana-Champaign Pamidighantam, Sudhakar,Vanmoer, Mark 5/7/16
Implementation of Sol in OpenTopography Jon Damian Pelletier University of Arizona Liu, Yan,Rynge, Mats 5/7/16
Continuation Request for XSEDE Research Allocation on Blacklight at the Pittsburgh Supercomputing Center (PSC) Noushin Ghaffari Texas A&M University Blood, Phillip,Singh, Raminder 6/30/16
Science Gateway Renewal: Asteroseismic Modeling Portal Travis Metcalfe Space Science Institute Nienhouse, Eric,Xu, Haiying 6/30/16
Video Analysis Techniques: Optimization and Advanced UI, Virginia Kuhn University of Southern California Marini, Luigi,Puthanveetil, Sandeep 6/30/16
XSEDE Text Analytics Gateway Michael Simeone University of Illinois at Urbana-Champaign Schmidt, Drew 6/30/16
Tribal College and University Distributed Advanced Manufacturing Project Christopher Thomas Griffen Bay Mills Community College Zhao, Lan 7/15/16
WaterHUB for Hydrologic Modeling and Education Venkatesh Merwade Purdue University Zhao, Lan 9/7/16
Earthquake and Fault System Dynamics Research, Y2 Yifeng Cui University of California, San Diego Koesterke, Lars,Pekurovsky, Dmitry,Rynge, Mats 9/30/16
Reference Gene, Genome, and Microbiome Catalogs for Understanding Microbiome Dynamics Rob Knight University of California, San Diego Wong, Mona 9/30/16
DiaGrid: Deliverying Science-as-a-Service for Collaborative Research and Education Communities Carol Xiaohui Song Purdue University Thompson, Christopher 10/2/16
BioTeam Science Gateway for Life Sciences Applications Ari Berman BioTeam, Inc. Marru, Suresh 10/4/16
Reciprocal Net – A Distributed Crystallographic Database Pink, Maren Indiana University Ma, Yu (Marie) 10/12/16
MutPred Service Predrag Radivojac Indiana University-Purdue University Fort Wayne Ma, Yu (Marie) 10/26/16
Developing Large-Scale Distributed Deep Learning Methods for Protein Bioinformatics Jinbo Xu Toyota Technological Institute at Chicago Pamidighantam, Sudhakar 11/8/16
Analysis of Cryo-EM data on Comet and Gordon Andres E Leschziner University of California, San Diego Wong, Mona 12/31/16
Science and Engineering Applications Grid (SEAGrid): A Gateway for Simulation of Molecular and Material Structures and Dynamics, y3 Sudhakar V. Pamidighantam University of Illinois at Urbana-Champaign Chen, Kevin 12/31/16
Simulation for the IceCube telescope data analysis and detector upgrade studies Francis Halzen University of Wisconsin-Madison Rynge, Mats 12/31/16
The MP-Complete Science Gateway Shyue Ping Ong University of California, San Diego Wong, Mona 12/31/16
Deploying Containerized Coastal Model on XSEDE Resources Jian Tao Louisiana State University Wong, Mona 3/8/17
Unidata Cyberinfrastructure in a Cloud Computing Environment Mohan Ramamurthy UCAR/Unidata Marru, Suresh 3/20/17
Providing a Science Gateway to Existing Simulations of Galaxy Cluster Mergers, Y2 Marios Chatzikos University of Kentucky   6/12/17


Past projects

Project Name PI Name PI Institution AUSS Staff Assigned End Date
Cyber-enabled investigations of turbulence: studies of mixing and dispersion Pui-kuen Yeung    Zhao, Lan 9/30/12
Social Science Gateway Lars Vilhuber   Uram, Tom 1/25/13
Coupling climate and hydrological models: interoperability through web services Cecelia DeLuca   You, Haihang 3/14/13
Computational Studies of Complex Processes In Biological Macromolecular Systems Benoit Roux   Pamidighantam, Sudhakar 3/31/13
Science Gateway for Systems Biology Workbench Portal Bhanu Rekepalli   Gunathilake, Lahiru 4/6/13
Realizing the Universe on XSEDE: Simulation Support for the Dark Energy Survey August Evrard   Singh, Raminder 6/30/13
Evaluation of Airavata with ADaM Toolkit Manil Maskey   Gunathilake, Lahiru 9/14/13
Providing a Neuroscience Gateway Amitava Majumdar   Schwartz, Terri 11/10/13
Terrain analysis using digital elevation models David Tarboton   Fan, Ye, Liu, Yan 11/15/13
SCEC Petascale Research: An Earthquake System Science Approach to Physics-based Seismic Hazard Research Thomas Jordan University of Southern California   12/31/13
NCGAS Benchmarking and Initial Collaborations Richard LeDuc   Ma, Yu (Marie), Marru, Suresh, Pierce, Marlon 2/13/14
Coupling Climate and Hydrological Models: Interoperability Through Web Services  Cecelia DeLuca     3/14/14
SPLINTER (Structural Protein-Ligand Interactome) Robert Quick Indiana University Marru, Suresh, Singh, Raminder 3/14/14
Einstein Genome Gateway Joseph Hargitai Albert Einstein College of Medicine Pierce, Marlon 3/30/14
High-Resolution Modeling of Hydrodynamic Experiments Borries Demeler University of Texas Health Science Center, San Antonio Singh, Raminder 3/31/14
Science and Engineering Applications Grid (SEAGRID): A Gateway for Simulation of Molecular and Material Structures and Dynamics Sudhakar Pamidighantam University of Illinois at Urbana-Champaign Smith, Warren 3/31/14
CESM portal: A gateway for integrated climate modeling, data analysis, archiving and metadata publishing Matthew Huber Purdue University Marru, Suresh 4/25/14
A RADICAL Use of XSEDE: Large-Scale Atomistic MD Simulations, Multi-Scale Climate Modeling and associated Cyberinfrastructure for XSEDE Resources  Shantenu Jha Rutgers, the State University of New Jersey   6/30/14
The CIPRES Science Gateway: A Resource of Inference of Large Phylogenetic Trees Mark Miller University of California-San Diego   6/30/14
Identification of Mechanism Based Inhibitors of Oncogene Pathways Using High-Performance Docking Yuri Peterson   Rekepalli, Bhanu 6/30/13
Mesoscale Airflow over Mountains: Wave Drag and Orographic Precipitation Dale Durran   Crosby, Lonnie, Wozniak, Jo 6/30/13
Investigation of Flow and Transport in Porous Media Dimitiros Papavassiliou   James, Doug, McLay, Robert, Rosales, Carlos 6/30/13
Science Gateway for Systems Biology Workbench Portal Bhanu Rekepalli   Gunathilake, Lahiru 4/6/13
Realizing the Universe on XSEDE: Simulation Support for the Dark Energy Survey August Evrard   Singh, Raminder 6/30/13