ECSS Projects
Explore ECSS's current and past projects, research teams, and science gateways.
Project List
For each of the following groups, the tables below list the Project, PI and Institution, the ECSS consultant(s) and the end date of the allocated support.
Research Teams
| Project Name | PI Name | PI Institution | ECSS Consultant | Allocation End Date |
|---|---|---|---|---|
| Genome Assembly and Annotation of Red Abalone, Yellowtail, Soybean Cyst Nematode and Spiny Softshell Turtle, y2 | David O'Neal, Philip Blood | Iowa State University | Andrew J Severin | 6/30/18 |
| Using Galaxy and Jetstream resources to analyze non-coding and unmapped regions of whole genomes of healthy and disease-carrying dogs | Philip Blood | University of Missouri, Columbia | Tendai Mutangadura | 6/30/18 |
| Computational Support for Bioinformatics Projects on Assembly Analysis of Fungal Metagenomes for the Discovery of Genes Involved in Important Biological Processes | Alex Ropelewski | Tennessee State University | Suping Zhou | 6/30/18 |
| Searching the SRA | Eroma Abeysinghe, Mats Rynge | San Diego State University | Robert Edwards | 9/7/18 |
| An implicit, Chimera-based discontinuous Galerkin solver: development and application | Davide Del Vento, Shiquan Su | University of Cincinnati | Paul David Orkwis | 9/30/18 |
| Statistical Analysis for Partially-Observed Markov Processes with Marked Point Process Obs, Y4 | Mitchel DeWayne Horton | University of Missouri, Kansas City | Yong Zeng | 6/30/18 |
| Alpha-viscosity vs. GRMHD | Damon McDougall | College of Charleston | Patrick C Fragile | 6/30/18 |
| Atmospheric Science in the Cloud: Enabling Data-Proximate Science | Suresh Marru | UCAR/Unidata | Mohan Ramamurthy | 6/30/18 |
| NFIE Hydrological Property Computation at National Scale | Yan Liu | University of Texas at Austin | Zong-Liang Yang | 7/17/18 |
| Genome-Wide microRNAs and Single Gamete Based Genetic Profiling of Sweet Sorghum Varieties for Biofuel Production | Alex Ropelewski | Tennessee State University | Ahmad Naseer Aziz | 5/16/18 |
| GISandbox: A Gateway for Research, Education, and Experimentation in Geographic Information Systems and Science (GIS) | Andrea Zonca, Davide Del Vento | University of Minnesota | Eric Shook | 6/4/18 |
| Development of a High-Performance Parallel Gibbs Ensemble Monte Carlo Simulation Engine | Junwen Li, Yifeng Cui | Wayne State University | Jeffrey J. Potoff | 5/30/18 |
| Particle-in-Cell and Kinetic Simulation Software Center (PICKSC) Gateway | Eroma Abeysinghe, Suresh Marru | University of California, Los Angeles | Benjamin John Winjum | 5/16/18 |
| Numerical Simulations of Neutron Star Mergers | Lars Koesterke | Institute for Advanced Study | David Radice | 6/30/18 |
| Bioinformatics Pipeline and Infrastructure Development for Genomics, Y2 | Alex Ropelewski | University of Pittsburgh | Uma Chandran | 6/30/18 |
| OpenTopography: A gateway to high resolution topography data and services | Choonhan Youn | San Diego Supercomputer Center | Viswanath Nandigam | 7/22/18 |
| DISSCO, a Digital Instrument for Sound Synthesis and Composition, Y2 | Paul Rodriguez | University of Illinois at Urbana-Champaign | Sever Tipei | 6/13/18 |
| Six Degrees of Francis Bacon, Y2 | David Walling | Carnegie Mellon University | Christopher Norton Warren | 6/30/18 |
| High Resolution Spatial Temporal Analysis of Whole-Head 306-Channel Magnetoencephalography and 66-Channel Electroencephalograpy Brain Imaging in Humans During Sleep | Mona Wong | University of California, San Diego | David Shannahoff-Khalsa | 8/31/18 |
| Allocation Request on Bridges for Joint Analysis of Metagenomics and Metabolomics Data, Y4 | Paul Rodriguez, Philip Blood | University of Georgia | Ping Ma | 9/30/18 |
| Analysis of human cortical electrophysiological data: database design for rapid analysis | Roberto Gomez | University of Pittsburgh | Max Novelli | 7/16/18 |
| Assessment of Competition in the US Markets Based on Retail Scanner Data | Kwai Wong, Od Odbadrakh | Kansas State University | Philip Garland Gayle | 9/4/18 |
| Simulation for 2D Semiconductor with Parallel Uniform and Adaptive Multigrid Method for Multi-component Phase Field Crystal Models, Y2 | David Bock, Dmitry Pekurovsky, Sudhakar Pamidighantam | University of California, Irvine | Zhen Guan | 9/30/18 |
| Turbulent Mixing in a Magnetic Field and Flow strcuture under Successive Axisymmetric Straining, Y2 | Lars Koesterke | Georgia Institute of Technology | Pui-kuen Yeung | 9/30/18 |
| Interoperating CyberGIS and HydroShare for Scalable Geospatial and Hydrologic Sciences | Yan Liu | University of Illinois at Urbana-Champaign | Shaowen Wang | 11/27/18 |
| Modeling Heliospheric Phenomena with MS-FLUKSS and Observational Boundary Conditions | Laura Carrington | University of Alabama, Huntsville | Nikolai Pogorelov | 6/30/18 |
| Preparing for Checkpoint-Restart in the Exascale Generation, Y3 | Cyrus "William" Proctor | Northeastern University | Gene Cooperman | 12/31/18 |
| Science and Engineering Applications Grid (SEAGrid): A Gateway for Simulation of Molecular and Material Structures and Dynamics | Feng Kevin Chen | Indiana University | Sudhakar V. Pamidighantam | 12/31/18 |
| Modeling AGN Feedback Physics in Galaxy clusters with Ultra-High Resolution Cosmological Simulations | Albert Lu | Yale University | Erwin Tin-Hay Lau | 6/29/18 |
| The "Morelli Machine": A Proposal Testing a Critical, Algorithmic Approach to Art History | Alan Craig, Paul Rodriguez | University of Pittsburgh | Christopher James Nygren | 10/8/18 |
| Understanding sustainability issues in the global farm-food system using a global gridded model of agriculture | Lan Zhao | Purdue University | URIS BALDOS | 1/23/19 |
| Exploring the full simulation modeling workflow on XSEDE | Andrea Zonca | US Geological Survey | Richard P Signell | 11/19/18 |
| New Frontiers of Direct Laser Acceleration in Megatesla Magnetic Fields | Amit Chourasia, Shiquan Su | University of California, San Diego | Alex Arefiev | 2/6/19 |
| Gateway for SimVascular Educational Users | Eroma Abeysinghe, Marcus Christie | Stanford University | Alison Lesley Marsden | 9/7/18 |
| Method Development and Application of Electronic Structure Calculations for Complex Nanostructures | Yang Wang | Carnegie Mellon University | Kaushik Dayal | 3/31/19 |
| The Best Practices to Supported Softwares on TACC HPC Systems | Hang Liu | TACC | John Cazes | 12/31/18 |
Community Codes
| Project Name | PI Name | PI Institution | ECSS Consultant | Allocation End Date |
|---|---|---|---|---|
| Adaptive Finite-element Simulations of Complex Industrial Flow Problems | Cameron Walter Smith | Rensselaer Polytechnic Institute | Huang, Lei | 6/30/17 |
| Direct Numerical Simulations and Analysis of Compressible And Incompressible Turbulence, Y3 | Diego Donzis | Texas A&M University | Patel, Pragnesh | 6/30/17 |
| Genome Assembly and Annotation of Red Abalone, Yellowtail, Soybean Cyst Nematode and Spiny Softshell | Andrew J Severin | Iowa State University | O'Neal, David | 6/30/17 |
| Omics approaches to understanding cellular and organismal responses to chronic stress in marine mamm | Jane Khudyakov | University of the Pacific | Ferlanti, Erik | 9/1/17 |
| Surface-induced forcing and decadal variability and change of the East Asian climate, surface hydrol | Yongkang Xue | University of California, Los Angeles | Su, Shiquan | 9/14/17 |
| Assessing future flood risk from the emerging threat of Madden-Julian Oscillation amplification usin | Gabe Kooperman | University of California, Irvine | Liu, Si | 9/30/17 |
| Computational Anatomy Gateway | Michael I Miller | Johns Hopkins University | Gomez, Antonio | 9/30/17 |
| Exploring the universe with Advanced LIGO's detections of compact-object binaries | Duncan Brown | Syracuse University | Koesterke, Lars,Pekurovsky, Dmitry | 9/30/17 |
| Predictability and Data Assimilation of Severe Weather and Tropical Cyclones, Y2 | Fuqing Zhang | Pennsylvania State University | Foss, Greg | 9/30/17 |
| Computational Support for Bioinformatics Projects on Assembly Analysis of Fungal Metagenomes for the | Suping Zhou | Tennessee State University | Ropelewski, Alex | 12/31/17 |
| Preparing for Checkpoint-Restart in the Exascale Generation, Y2 | Gene Cooperman | Northeastern University | Vienne, Jerome | 12/31/17 |
| Simulation of Quantum Circuits in the Clifford-T gate set | Antia Lamas-Linares | Texas Advanced Computing Center | Proctor, Cyrus | 2/9/18 |
| Using semantic networks to generate novel hypotheses in biomedicine | Jodi Schneider | University of Illinois at Urbana-Champaign | 3/1/18 | |
| Alpha-viscosity vs. GRMHD | Patrick C Fragile | College of Charleston | 3/31/18 | |
| Development of a High-Performance Parallel Gibbs Ensemble Monte Carlo Simulation Engine | Jeffrey J. Potoff | Wayne State University | 5/31/18 |
Science Gateways
| Project Name | PI Name | PI Institution | ECSS Consultant | Allocation End Date |
|---|---|---|---|---|
| Data Investigation and Sharing Environment for Big Weather Web | Carlos Maltzahn | University of California, Santa Cruz | Marru, Suresh | 12/1/17 |
| Atmospheric Science in the Cloud: Enabling Data-Proximate Science | Mohan Ramamurthy | UCAR/Unidata | Marru, Suresh | 12/31/17 |
| Deploying Multi-Facility Cyberinfrastructure in XSEDE cloud and storage facilities to serve the nati | Timothy Keith Ahern | Incorporated Research Institutions for Seismology | Zonca, Andrea | 12/31/17 |
| Inter-cloud Bursting: Decreasing Time-to-Science with a Multi-Stack Cloud Federation | Adam M Brazier | Cornell University | Rynge, Mats | 12/31/17 |
| Modeling the Effective Energy and Mass Transfer input to Earth's Critical Zone from sub-meter to glo | Jon Damian Pelletier | University of Arizona | Liu, Yan,Rynge, Mats | 12/31/17 |
| NFIE Hydrological Property Computation at National Scale | Zong-Liang Yang | University of Texas at Austin | Liu, Yan | 1/17/18 |
| Particle-in-Cell and Kinetic Simulation Software Center (PICKSC) Gateway | Benjamin John Winjum | University of California, Los Angeles | 5/16/18 | |
| GISandbox: A Gateway for Research, Education, and Experimentation in Geographic Information Systems | Eric Shook | University of Minnesota | 6/4/18 |
Past projects
| Project Name | PI Name | PI Institution | ECSS Consultant | Allocation End Date |
|---|---|---|---|---|
| Carnegie Library of Pittsburgh: Digital Asset Management | Brooke Sansosti | Carnegie Library of Pittsburgh | Gomez, Roberto | 10/18/17 |
| DiaGrid: Deliverying Science-as-a-Service for Collaborative Research and Education Communities | Carol Xiaohui Song | Purdue University | Thompson, Christopher | 10/2/17 |
| WaterHUB for Hydrologic Modeling and Education | Venkatesh Merwade | Purdue University | Zhao, Lan | 9/7/17 |
| dREG Science Gateway | Charles G Danko | Cornell University | Abeysinghe, Eroma | 8/14/17 |
| High Resolution Spatial Temporal Analysis of Whole-Head 306-Channel Magnetoencephalography and 66-Ch | David Shannahoff-Khalsa | University of California, San Diego | Wong, Mona | 8/9/17 |
| Simulation for the IceCube telescope data analysis and detector upgrade studies | Francis Halzen | University of Wisconsin-Madison | Rynge, Mats | 6/30/17 |
| Providing a Science Gateway to Existing Simulations of Galaxy Cluster Mergers, Y2 | Marios Chatzikos | University of Kentucky | Thompson, Christopher | 6/12/17 |
| A RADICAL Use of XSEDE: Large-Scale Atomistic MD Simulations, Multi-Scale Climate Modeling and associated Cyberinfrastructure for XSEDE Resources | Shantenu Jha | Rutgers, the State University of New Jersey | 6/30/14 | |
| The CIPRES Science Gateway: A Resource of Inference of Large Phylogenetic Trees | Mark Miller | University of California-San Diego | 6/30/14 | |
| CESM portal: A gateway for integrated climate modeling, data analysis, archiving and metadata publishing | Matthew Huber | Marru, Suresh | 4/25/14 | |
| High-Resolution Modeling of Hydrodynamic Experiments | Borries Demeler | University of Texas Health Science Center, San Antonio | Singh, Raminder | 3/31/14 |
| Science and Engineering Applications Grid (SEAGRID): A Gateway for Simulation of Molecular and Material Structures and Dynamics | Sudhakar Pamidighantam | University of Illinois at Urbana-Champaign | Smith, Warren | 3/31/14 |
| Einstein Genome Gateway | Joseph Hargitai | Albert Einstein College of Medicine | Pierce, Marlon | 3/30/14 |
| Coupling Climate and Hydrological Models: Interoperability Through Web Services | Cecelia DeLuca | 3/14/14 | ||
| SPLINTER (Structural Protein-Ligand Interactome) | Robert Quick | Indiana University | Marru, Suresh, Singh, Raminder | 3/14/14 |
| NCGAS Benchmarking and Initial Collaborations | Richard LeDuc | Ma, Yu (Marie), Marru, Suresh, Pierce, Marlon | 2/13/14 | |
| SCEC Petascale Research: An Earthquake System Science Approach to Physics-based Seismic Hazard Research | Thomas Jordan | University of Southern California | 12/31/13 | |
| Terrain analysis using digital elevation models | David Tarboton | Fan, Ye, Liu, Yan | 11/15/13 | |
| Providing a Neuroscience Gateway | Amitava Majumdar | Schwartz, Terri | 11/10/13 | |
| Evaluation of Airavata with ADaM Toolkit | Manil Maskey | Gunathilake, Lahiru | 9/14/13 | |
| Realizing the Universe on XSEDE: Simulation Support for the Dark Energy Survey | August Evrard | Singh, Raminder | 6/30/13 | |
| Identification of Mechanism Based Inhibitors of Oncogene Pathways Using High-Performance Docking | Yuri Peterson | Rekepalli, Bhanu | 6/30/13 | |
| Mesoscale Airflow over Mountains: Wave Drag and Orographic Precipitation | Dale Durran | Crosby, Lonnie, Wozniak, Jo | 6/30/13 | |
| Investigation of Flow and Transport in Porous Media | Dimitiros Papavassiliou | James, Doug, McLay, Robert, Rosales, Carlos | 6/30/13 | |
| Realizing the Universe on XSEDE: Simulation Support for the Dark Energy Survey | August Evrard | Singh, Raminder | 6/30/13 | |
| Science Gateway for Systems Biology Workbench Portal | Bhanu Rekepalli | Gunathilake, Lahiru | 4/6/13 | |
| Computational Studies of Complex Processes In Biological Macromolecular Systems | Benoit Roux | Pamidighantam, Sudhakar | 3/31/13 | |
| Coupling climate and hydrological models: interoperability through web services | Cecelia DeLuca | You, Haihang | 3/14/13 | |
| Social Science Gateway | Lars Vilhuber | Uram, Tom | 1/25/13 | |
| Cyber-enabled investigations of turbulence: studies of mixing and dispersion | Pui-kuen Yeung | Zhao, Lan | 9/30/12 |
Key Points
ECSS has assisted on more than 60 XSEDE projects
Contact Information