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XSEDE IMPACT MAY 2018

E-C-S-Yes: XSEDE's Extended Collaborative Support Services
 
How do cancer researchers learn to use the command line? Where can an art historian get help with machine learning? What happens when astronomers migrate their work to supercomputers, but the code still isn't running fast enough? XSEDE offers users access to a number of compute, storage, and cloud-based resources housed at institutions across the country. But sometimes XSEDE users need help bridging the gap between what they want to do and their current capabilities. XSEDE's Extended Collaborative Support Services (ECSS) team provides individual and community guidance for users to improve, enhance, execute, and troubleshoot their projects. Want to learn more about how ECSS can help your project? Click the link below to explore a few of ECSS's major strengths.
 
 
 
How to Catch a Fish Genome with Big Data
 
Researchers from the Southwest Fisheries Science Center of the U.S. National Marine Fisheries Service, Iowa State University, and the Instituto Polit√©cnico Nacional in Mexico assembled and annotated for the first time the genome of the fish species Seriola dorsalis using XSEDE resources. Also known as California Yellowtail, it's a fish of high value to the seafood industry. Insights into its genome will help with breeding and commercialization. They published their results in January 2018 in the journal BMC Genomics.
 
 
 
Supercomputer Simulations Reveal New "Achilles heel" in Dengue Virus
 
With access to high performance supercomputers provided through an XSEDE allocation, a team of researchers at Colorado State University has identified a critical protein structure that could serve as a molecular Achilles heel able to inhibit the replication of dengue virus and potentially other flaviviruses such as West Nile and Zika virus. Their results were published in the Public Library of Science (PLOS) Computational Biology journal in April, 2018.
 
 
 
When Winds Get Rough
 
Wind power is clean and renewable. In the right geographic areas, it's also dependable. But the winds that create wind power can also buffet the wind turbine with violent changes of speed and direction. Over time, that buffeting wears down on the turbines' internal parts, causing them to break down and fail. This is a major financial drain on wind-energy plants, limiting the expansion of wind power. A team of researchers used XSEDE experts and resources to optimize their "large-eddy simulation" studies of the effects of atmospheric turbulence on wind turbines. Their end goal is to increase the lifetime of wind-turbine components in response to these non-steady wind stresses. If components last longer, wind energy will cost less and be feasible in more places.
 
 
 
Catching Mantle Plumes by Their Magma Tails
 
While we're learning more about how Hawaii's volcanos formed, what remains elusive is conclusive evidence regarding the existence of mantle plumes (hypothesized, mushroom-shaped upwellings of hot rock formed within the thermal boundary layer at the base of the mantle and thought to carry heat from Earth's core that generates a volcano's magma). However, with the help of XSEDE, researchers have conducted the best computational modeling to date of mantle plumes, showing for the first time details of how plumes decelerate seismic waves and how plumes appear in seismic tomographic images of the Earth's mantle. These findings could help guide future experiments on the ocean floor with deep Earth imaging and help get to the bottom of mysteries like the origin of Hawaii's volcanos. 
 
 
Upcoming Events
 
 
Tune in for the ECSS Symposium on May 15!
 
All are welcome to attend the ECSS symposium on Tuesday, May 15 at 1 p.m. Eastern/10 a.m. Pacific featuring "Computational fluid-structure interaction of biological systems" with Hang Liu of TACC and "A historical big data analysis to disclose the social construction of juvenile delinquency" with Sandeep Puthanveetil of NCSA. Click the link below for symposium coordinates and additional details.
 
 
 
Register Now for XSEDE HPC Summer Bootcamp Workshop
 
XSEDE, along with the Pittsburgh Supercomputing Center will be presenting a Hybrid Computing workshop June 4-7. This 4 day event will include MPI, OpenMP, OpenACC and accelerators and will be presented using the Wide Area Classroom (WAC) training platform and will conclude with a special hybrid exercise contest that will challenge the students to apply their skills over the following 3 weeks and be awarded the Fifth Annual XSEDE Summer Boot Camp Championship Trophy. In addition, an XSEDE Badge will be available to those who complete the Challenge. A full list of sites, training agenda, and registration form may be found via the link below.
 
 
 
Register for PEARC18 Before Price Increase on June 4
 
PEARC18 is open to scientists and engineers, scholars and planners, artists and makers, students and teachers---all who depend on the efficiency, security, reliability and sustainability of increasingly complex and powerful digital infrastructure systems. The conference will take place July 22-26 at the Wyndham Grand Pittsburgh Downtown (600 Commonwealth Place, Pittsburgh PA 15222). Registration fees increase June 4, so register today! 
 
 
 
Gateways 2018 Call for Proposals Deadline Extended to May 16!
 
The deadline for the Gateways 2018 Call for Participation has been extended to May 16, 2018.
 
Gateways 2018 (September 25-27, at the University of Texas at Austin) is accepting submissions of papers, demos, tutorials, and panels (2-4 pages) on the topic of science or engineering gateways. Topics
may include their design, use, impact, development processes, sustainability, best practices, or any other aspect that you think fellow gateway creators or users will find interesting to learn. We also welcome educational topics directed toward the next generation of gateway creators. The poster session deadline (open to all) is August 1, 2018. Full submission details can be found at the link below.
 
 
 
Apply Now for Science Gateways Bootcamp August 13-17 in Chicago
 
Are you building or developing a science gateway (portal, virtual research environment, digital interface)? If so, the Science Gateways Bootcamp could be for you. 
 
Science Gateways Bootcamp: Strategies for Developing, Operating, and Sustaining Your Gateway is a week-long workshop for leaders of gateways who want to further develop and scale their work. Participants engage in hands-on activities to help them articulate the value of their work to key stakeholders and to create a strong development, operations, and sustainability plan. By the end of the Bootcamp, participants will have developed a working hypothesis of their sustainability strategy and identified the key action steps to get there.
 
The next Bootcamp, offered by the Science Gateways Community Institute, will take place August 13-17, 2018 in Chicago, IL. There is no cost to participate in the Bootcamp. Applications will be accepted through June 22, 2018. Learn more and apply at the link below.
 
 
 
Save the Date: 2018 NSF Cybersecurity Summit August 21-23
 
You're invited to attend and participate in the 2018 NSF Cybersecurity Summit for Large Facilities and Cyberinfrastructure to be held August 21-23 in Alexandria, VA. Call for participation is open until June 13th. The Summit is also seeking nominations for the Community Leadership Recognition Program, and applications for the student program. To learn more, visit the summit's website below.
 
 
Save the Dates for: