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Posters
SeedMe Live: Your Results from Disk to Device
Amit Chourasia, Mona Wong and Michael Norman
Amit Chourasia, Mona Wong and Michael Norman
CI Practitioner: Filling Gaps in Student Preparation for Cyberinfrastructure-Focused Careers
Galen Collier, Amy Apon, J. Barr von Oehsen and James Pepin
Galen Collier, Amy Apon, J. Barr von Oehsen and James Pepin
The ACI-REF Program: Empowering Prospective Computational Researchers
Galen Collier, Wim Cardoen, Martin Cuma, Robert Freeman, Aaron Kitzmiller, Lauren Michael, Ken-Ichi Nomura, Anita Orendt and Lori Tanner
Galen Collier, Wim Cardoen, Martin Cuma, Robert Freeman, Aaron Kitzmiller, Lauren Michael, Ken-Ichi Nomura, Anita Orendt and Lori Tanner
Campus Champion Fellow Project: Density-Functional Tight-Binding Simulations of Nanomaterials
Shawn Duan
Shawn Duan
Bio-inspired resin acid-derived materials as anti-bacterial resistance agents with unexpected activities
Jerry Ebalunode and Chuanbing Tang
Jerry Ebalunode and Chuanbing Tang
Fast Molecular Shape Similarity Searching on the Intel Xeon Phi
Jerry Ebalunode and Weifan Zheng
Jerry Ebalunode and Weifan Zheng
QRing – A scalable parallel software tool for quantum transport simulations in carbon nanoring devices based on NEGF formalism and a parallel C++ / MPI / PETSC algorithm.
Mark A. Jack, Adam Byrd, Leon W. Durivage, Michael J. Leamy and Ben Prather
Mark A. Jack, Adam Byrd, Leon W. Durivage, Michael J. Leamy and Ben Prather
Next Generation Resequencing of Soybean Germplasm for Trait Discovery on XSEDE using Pegasus Workflows and iPlant Infrastructure
Trupti Joshi, Babu Valliyodan, Saad Khan, Yang Liu, Joao Maldonado Dos Santos, Jeuxin Wang, Dong Xu, Henry Nguyen, Nirav Merchant, Nicole Hopkins and Mats Rynge
Trupti Joshi, Babu Valliyodan, Saad Khan, Yang Liu, Joao Maldonado Dos Santos, Jeuxin Wang, Dong Xu, Henry Nguyen, Nirav Merchant, Nicole Hopkins and Mats Rynge
Evaluating CIPRES Science Gateway Integration Options with Apache Airavata
Don Kushan Wijeratne, Mark Miller, Terri Schwartz, Suresh Marru and Marlon Pierce
Don Kushan Wijeratne, Mark Miller, Terri Schwartz, Suresh Marru and Marlon Pierce
Addressing Parallelism in Undergraduate Computer Science Courses
David Monismith
David Monismith
Determining the microbial distribution of geocoded soil samples from sites in Iceland by 16S rRNA metagenomic analysis using Mothur on XSEDE computational resources: Science in the field on a glacier
Charles Peck, Kristin Muterspaw, Ruth Lewis, Anna Plotkin-Swing and Deeksha Srinath
Charles Peck, Kristin Muterspaw, Ruth Lewis, Anna Plotkin-Swing and Deeksha Srinath
The International Brain and Behavior Consortium Genomics Gateway
David Rhee, Kevin Shieh, Pilib Ó Broin, Raquel Gur and Aaron Golden
David Rhee, Kevin Shieh, Pilib Ó Broin, Raquel Gur and Aaron Golden
ECSS Workflows – An Overview and Update
Mats Rynge, Marlon Pierce and Suresh Marru
Mats Rynge, Marlon Pierce and Suresh Marru
Introducing MPI in Diverse Curricula
Steve Spicklemire
Steve Spicklemire
Impact of Hybrid Warm Water Direct Cooling Solution on Energy Efficiency of a Data Center
Nitin Sukhija, Roger Smith and William Breckenridge Iii
Nitin Sukhija, Roger Smith and William Breckenridge Iii
Pegasus WMS: Enabling Large Scale Workflows on National Cyberinfrastructure
Karan Vahi, Ewa Deelman, Gideon Juve, Mats Rynge, Rajiv Mayani and Rafael Silva
Karan Vahi, Ewa Deelman, Gideon Juve, Mats Rynge, Rajiv Mayani and Rafael Silva
On Comparison of R performance with hardware enabled parallelism
Hui Zhang, Weijia Xu, Huian Li, Yaakoub Khamra, Naill Gaffney and Eric Wernert
Hui Zhang, Weijia Xu, Huian Li, Yaakoub Khamra, Naill Gaffney and Eric Wernert
Community Earth System Model Gateway
Pengxuan Zheng, Raminder Singh and Christopher Thompson
Pengxuan Zheng, Raminder Singh and Christopher Thompson
Graduate Student Posters
Design and Implementation of a Web Service-Oriented Gateway to Facilitate Environmental Modeling using HPC Resources
Ahmet Artu Yildirim, David Tarboton, Pabitra Dash and Dan Watson
Ahmet Artu Yildirim, David Tarboton, Pabitra Dash and Dan Watson
Tool Development for early Automatic Breast Cancer Detection in Mammograms through MATLAB as a Computing Environment
Shahrukh Barbar, Thomas Hahn and Rabail Zehra
Shahrukh Barbar, Thomas Hahn and Rabail Zehra
Parallel Multiscale Modeling of Transportation Accidents Involving Explosives
Jacqueline Beckvermit, Todd Harman, Andrew Bezdjian, Qingyu Meng, Martin Berzins and Charles Wight
Jacqueline Beckvermit, Todd Harman, Andrew Bezdjian, Qingyu Meng, Martin Berzins and Charles Wight
OSDC BigDataBus: Towards an Unified Architecture for Scientific Data Aggregation
Pedro Bello-Maldonado, Ana Oprescu, Paola Grosso, Heidi Alvarez and Indira Gutierrez
Pedro Bello-Maldonado, Ana Oprescu, Paola Grosso, Heidi Alvarez and Indira Gutierrez
Scaling Next Generation Sequencing Assembly for Very Large Datasets using the XSEDE Resource Blacklight
Matthew Brian Couger, Rolf Prade, Fabio Squaina and Phil Blood
Matthew Brian Couger, Rolf Prade, Fabio Squaina and Phil Blood
Transcriptome Analysis of the Guinea Fowl (Numida meleagris)
Carl Darris, Samuel Nahashon and Alex Ropelewski
Carl Darris, Samuel Nahashon and Alex Ropelewski
Topology Control for Load Shed Recovery
Adolfo Escobedo, Erick Moreno-Centeno and Kory Hedman
Adolfo Escobedo, Erick Moreno-Centeno and Kory Hedman
Apache Airavata Application Factory
Lahiru Gunathilake, Suresh Marru and Marlon Pierce
Lahiru Gunathilake, Suresh Marru and Marlon Pierce
Biomedical text mining using large-scale distributed machine learning algorithms
Thomas Hahn, Prasanna Balakrishnan, Neha Gupta and Dr. Richard Segall
Thomas Hahn, Prasanna Balakrishnan, Neha Gupta and Dr. Richard Segall
Graphical multiple sequence alignment tool
Thomas Hahn, Emre Ermişoğlu and Recep Avci
Thomas Hahn, Emre Ermişoğlu and Recep Avci
Modeling 3D Cell Migration
Xiuxiu He, Kristin Riching, Byoungkoo Lee, Patricia Keely, Kevin Eliceiri, Alissa Weaver and Yi Jiang
Xiuxiu He, Kristin Riching, Byoungkoo Lee, Patricia Keely, Kevin Eliceiri, Alissa Weaver and Yi Jiang
Geography and Environment Predict Allele Frequencies in Infectious Disease Burdened Populations
Latifa Jackson, Max Shestov and Aydin Tozeren
Latifa Jackson, Max Shestov and Aydin Tozeren
Diffusion behaviors in non-uniform suspensions of red blood cells and platelets in channel flow
Jane Kang, David Rosen and Cyrus Aidun
Jane Kang, David Rosen and Cyrus Aidun
Forest Fire Detection Using GPU Implementation
Angusundaresh Krishnakumar and Gowtham Manoharan Gandhimathi
Angusundaresh Krishnakumar and Gowtham Manoharan Gandhimathi
Performance Evaluation of the General Equation and Mesh Solver (GEMS)
Lalithambika Krishnakumar, Swanand V. Sardeshmukh and Veronica G. Vergara Larrea
Lalithambika Krishnakumar, Swanand V. Sardeshmukh and Veronica G. Vergara Larrea
Implementing Petascale Workflow development into XSEDE Science Gateways
Yuan Liu and Bhanu Rekepalli
Yuan Liu and Bhanu Rekepalli
Modeling of platelet transport in flowing blood using direct numerical simulation of cellular blood flow
Marmar Mehrabadi, David Ku and Cyrus Aidun
Marmar Mehrabadi, David Ku and Cyrus Aidun
Improved understanding earthquake triggering from systematic detection of missing earthquakes in California
Xiaofeng Meng, Xiao Yu, Zhigang Peng and Bo Hong
Xiaofeng Meng, Xiao Yu, Zhigang Peng and Bo Hong
De Novo Assembly for Lucina pectinata whole genome
Ingrid Montes-Rodríguez, Alexander Ropeleweski, Hugh Nicholas, Ricardo González-Méndez, Carmen Cadilla-Vazquez and Juan López-Garriga
Ingrid Montes-Rodríguez, Alexander Ropeleweski, Hugh Nicholas, Ricardo González-Méndez, Carmen Cadilla-Vazquez and Juan López-Garriga
A combined quantum and classical approach to predict the C60 and C60 collisional product distribution at the experimental time-scale
Dulma Nugawela
Dulma Nugawela
Online monitoring of HPC resources using decentralized clustering
Alejandro Pelaez, Manish Parashar, James Browne, Andres Quiroz and Edward Chuah
Alejandro Pelaez, Manish Parashar, James Browne, Andres Quiroz and Edward Chuah
Next Generation Bioinformatics Tools on Next Generation Hybrid Architectures
Eduardo Ponce, Bhanu Rekepalli and Gregory D. Peterson
Eduardo Ponce, Bhanu Rekepalli and Gregory D. Peterson
Self-Assembly of Coarse-grained Amphiphilic Molecules Using Parallel Wang-Landau Sampling
Guangjie Shi, Thomas Vogel and David Landau
Guangjie Shi, Thomas Vogel and David Landau
Non-traditional HPC Approach Simulating Acute Kidney Injury (AKI) Recovery Process on XSEDE Platform: Time-Dependent Cellular Automaton (TDCA) Simulation Using Workflow Engine
Shiquan Su and Charles Collins
Shiquan Su and Charles Collins
REMix: Base-calling using a Random Effects Mixture Model for Next Generation Sequencing Data
Xiaoxiao Sun, Ashley Cacho, Ping Ma and Xinping Cui
Xiaoxiao Sun, Ashley Cacho, Ping Ma and Xinping Cui
Highly Scalable Parallel implementation of Drug Discovery Applications
Amit Upadhyay and Bhanu Rekepalli
Amit Upadhyay and Bhanu Rekepalli
ECSS Experience: Preparing a Production MPI Code for Hybrid Execution
Wentao Zhang, Daniel Bodony, John Larson and Lucas Wilson
Wentao Zhang, Daniel Bodony, John Larson and Lucas Wilson
Computational Design of Self-assembling Peptides
Huixi Zhang, Kenneth Koehler, Darrin Pochan and Jeffery Saven
Huixi Zhang, Kenneth Koehler, Darrin Pochan and Jeffery Saven
Undergraduate Student Posters
Critical Density Needed for a Deflagration to Detonation Transition
Andrew Bezdjian, Jacqueline Beckvermit, Dr. Todd Harman, Dr. Charles Wight and Dr. Martin Berzins
Andrew Bezdjian, Jacqueline Beckvermit, Dr. Todd Harman, Dr. Charles Wight and Dr. Martin Berzins
Using DAKOTA Optimization Package on a Cray XC30 Supercomputer - Applications to Geometry and Thermodynamics
Logan Brown and Kwai Wong
Logan Brown and Kwai Wong
Learning Parallel Programing through a Tool for Interactive Parallelization
Madhav Gupta and Ritu Arora
Madhav Gupta and Ritu Arora
Understanding the Brain – A Complex Combination of Algorithms
D'Von Jackson and Sajid Hussain
D'Von Jackson and Sajid Hussain
Search of Genetic Signaling Pathway with the Traveling Salesman Problem
Enery Lorenzo, Mauricio Cabrera-Rios, Alexander Ropelewski and Clara Isaza
Enery Lorenzo, Mauricio Cabrera-Rios, Alexander Ropelewski and Clara Isaza
Reconstructing History
Joseph Mcdavid and Vetria Byrd
Joseph Mcdavid and Vetria Byrd
Testing Different Strategies for Large Experimental Designs
Hecny Perez, Yaileen Méndez, Kasandra Ramírez and Mauricio Cabrera
Hecny Perez, Yaileen Méndez, Kasandra Ramírez and Mauricio Cabrera
Climate Changes
Taraen Taylor and Miah Adel
Taraen Taylor and Miah Adel
Expanding the Interoperable Executive Library for Stochastic Communication via Distributed Tuple Space
David White and Kwai Wong
David White and Kwai Wong
Special Program Graduate Student Posters
Performance Optimization of Multiscale QM/MM Software for Complex Chemical Systems
Pedro Bello-Maldonado and Andreas Goetz
Pedro Bello-Maldonado and Andreas Goetz
Video Camera Dead-Pixel Monitoring for NASA High Definition Earth Viewing Mission
Anshuka Charkal
Anshuka Charkal
GPU/Xeon Phi Accelerator Optimization of Convection/Geodynamo Simulation Code
Omeiza Olumoye, Eric Heien, Hiroaki Matsui and Louise Kellogg
Omeiza Olumoye, Eric Heien, Hiroaki Matsui and Louise Kellogg
A concurrent Binary Search Tree for Intel Xeon Phi
Arunmoezhi Ramachandran, Neeraj Mittal and Jerome Vienne
Arunmoezhi Ramachandran, Neeraj Mittal and Jerome Vienne
Optimizing the General Equation Mesh Solver (GEMS) for the Intel Xeon Phi coprocessor
Harsh Shah, Swanand Sardeshmukh and Verónica Vergara Larrea
Harsh Shah, Swanand Sardeshmukh and Verónica Vergara Larrea
Parallel Image Skeletonization Design & Implementation
Tarun Sharma
Tarun Sharma
Special Program Undergraduate Student Posters
Expressing Sustainability within the Web-Based Multiplayer Game Naranpur Online
Michael Bosch, Stephen Moysey, Catherine Mobley and D. Matthew Boyer
Michael Bosch, Stephen Moysey, Catherine Mobley and D. Matthew Boyer
Visualizing & Modeling Multi-Attributed Data to Highlight Scientific Uncertainty in Common Pool Resource Problems Using Groundwater Case Study Data
Dominic Brooks, Arnold Eatmon and Susanne Pierce
Dominic Brooks, Arnold Eatmon and Susanne Pierce
Visualizing the Properties of Carbon-based Molecules
Cameron Collins and Steven Stuart
Cameron Collins and Steven Stuart
High-Throughput Computational Screening of Nanoparticles for Chemical Catalysis
Benjamin Corona
Benjamin Corona
Fly-Through Visualization through Porous Media Microstructure
Brittney Crockett, Joyce Rigelo and Masa Prodanovic
Brittney Crockett, Joyce Rigelo and Masa Prodanovic
Quad-Core Computer System Proof-of-Concept for Cubesat
Daniel Cuevas-Vázquez
Daniel Cuevas-Vázquez
Light Visualization in the Dominican Rainforest
Saara Dewalt, Kalan Ickes, Colleen Burns and Vetria Byrd
Saara Dewalt, Kalan Ickes, Colleen Burns and Vetria Byrd
Virtualizing the Real-World for Environmental Education using the Oculus Rift
Luther Fant, Stephen Moysey, Matthew Boyer and Vetria Byrd
Luther Fant, Stephen Moysey, Matthew Boyer and Vetria Byrd
Interactive Rights: The Development of Next-Generation Educational Museum Exhibits
Janette Garcia and Alejandro Rangel
Janette Garcia and Alejandro Rangel
BigData with Hadoop, Spark, and ML
Angela Liu
Angela Liu
Quantitative Biomarker Analysis of MRI Images of Stroke Patients
Jamila Martin, Matt Cowperthwaite, James Carson, Matthew Vaughn and Steve Warach
Jamila Martin, Matt Cowperthwaite, James Carson, Matthew Vaughn and Steve Warach
QRing – A scalable parallel software tool for quantum transport simulations in carbon nanoring devices based on NEGF formalism and a parallel C++ / MPI / PETSc algorithm
Benjamin Prather and Mark Jack
Benjamin Prather and Mark Jack
Graph Analytics with Big Data
Ticha Sethapakdi
Ticha Sethapakdi
Visualization to Enhance Rare Event Simulations of Ice Nucleation
Tyler Slonecki, Ryan Defever, Brittany Glatz, Joshua Levine and Sapna Sarupria
Tyler Slonecki, Ryan Defever, Brittany Glatz, Joshua Levine and Sapna Sarupria
High Performance Simulated Spectral Imaging
Mallory Tackett and Paul Rulis
Mallory Tackett and Paul Rulis