ECSS Projects

Here is a list of ECSS Projects broken up by: Research Teams, Community Codes, Scientific Gateways, and Past Project

Last Updated June 14, 2016

Community Codes:

Project Name PI Name PI Institution Consultant Name Allocation End
Insight into biomolecular structure, dynamics, interactions and energetics from simulation: Finding and exposing problems in the methods and force fields Thomas Cheatham University of Utah Bowen, Anne,Gomez, Antonio 12/31/15
Simulating glacial climate in coastal South Africa: Developing the climate parameters to model a paleoscape during modern human origins  Curtis Marean Arizona State University O'Neal, David 3/31/16
Optimizing the Multi-State Modified Embedded Atom Method Code Addon for LAMMPS on Stampede Srinivasan Srivilliputhur University of North Texas   5/23/16
HPDBSCAN John Cazes University of Texas   6/30/16
Predictability and Data Assimilation of Severe Weather and Tropical Cyclones Fuqing Zhang Pennsylvania State University Eijkhout, Victor 6/30/16
National Flood Interoperability Experiment (NFIE) David Maidment University of Texas at Austin Liu, Si,Liu, Yan 8/17/16
Calculation of Sensitivity Coefficients for Individual Emissions Sources from Three Major Source Sectors in the Continental U.S. using CMAQ-DDM/3D Sarav Arunachalam University of North Carolina, Chapel Hill Evans, Todd 9/30/16
Measuring the Sensitivity of LIGO's Search for Stellar-Mass Coalescing Compact Object Binaries Duncan Brown Syracuse University Pekurovsky, Dmitry 9/30/16
Image Analysis of fMRI Data for Medical Applications Frank Michael Skidmore University of Alabama, Birmingham Brook, Glenn,Burdyshaw, Chad,Horton, Mitch,Yin, Junqi 11/3/16
Adaptive Finite-element Simulations of Complex Industrial Flow Problems Cameron Walter Smith Rensselaer Polytechnic Institute Huang, Lei 12/31/16
Genome Assembly and Annotation of Red Abalone, Yellowtail, Soybean Cyst Nematode and Spiny Softshell Turtle, y2 Andrew J Severin Iowa State University O'Neal, David 12/31/16
Multiscale Climate and Earth System Modeling, y5 Yang Zhang North Carolina State University   12/31/16
Preparing for Checkpoint-Restart in the Exascale Generation Gene Cooperman Northeastern University Vienne, Jerome 12/31/16
Numerical Methods and Models Using Stochastic (Partial) Differential Equations in Biology Christopher Vincent Rackauckas University of California, Irvine Choi, DJ 2/16/17
Finding Real Differences Between Semi-supervised Learning Algorithms Using PJ2 George Rudolph The Citadel Vienne, Jerome 3/16/17
Study of Mechanotransduction Through Proteins Via Molecular Dynamics Simulations Tess J Moon University of Texas at Austin Huang, Lei 3/22/17
Bioinformatics Pipeline and Infrastructure Development for Cancer Genomics Uma Chandran University of Pittsburgh Ropelewski, Alex 3/31/17
Optoelectronic Properties of Dilute Germanium Carbides Mark Wistey University of Notre Dame Wang, Yang 3/31/17

 

Scientific Gateways:

Project Name PI Name PI Institution Consultant Name Allocation End
The Galaxy XSEDE Gateway James Taylor  Johns Hopkins University  Blood, Phillip 12/31/15
Simulocean Gateway Jian Tao Louisiana State University Rynge, Mats 4/28/16
Gateway-based flow simulations for remote users Arne J. Pearlstein University of Illinois at Urbana-Champaign Pamidighantam, Sudhakar,Vanmoer, Mark 5/7/16
Implementation of Sol in OpenTopography Jon Damian Pelletier University of Arizona Liu, Yan,Rynge, Mats 5/7/16
Continuation Request for XSEDE Research Allocation on Blacklight at the Pittsburgh Supercomputing Center (PSC) Noushin Ghaffari Texas A&M University Blood, Phillip,Singh, Raminder 6/30/16
Science Gateway Renewal: Asteroseismic Modeling Portal Travis Metcalfe Space Science Institute Nienhouse, Eric,Xu, Haiying 6/30/16
Video Analysis Techniques: Optimization and Advanced UI, Virginia Kuhn University of Southern California Marini, Luigi,Puthanveetil, Sandeep 6/30/16
XSEDE Text Analytics Gateway Michael Simeone University of Illinois at Urbana-Champaign Schmidt, Drew 6/30/16
Tribal College and University Distributed Advanced Manufacturing Project Christopher Thomas Griffen Bay Mills Community College Zhao, Lan 7/15/16
WaterHUB for Hydrologic Modeling and Education Venkatesh Merwade Purdue University Zhao, Lan 9/7/16
Earthquake and Fault System Dynamics Research, Y2 Yifeng Cui University of California, San Diego Koesterke, Lars,Pekurovsky, Dmitry,Rynge, Mats 9/30/16
Reference Gene, Genome, and Microbiome Catalogs for Understanding Microbiome Dynamics Rob Knight University of California, San Diego Wong, Mona 9/30/16
DiaGrid: Deliverying Science-as-a-Service for Collaborative Research and Education Communities Carol Xiaohui Song Purdue University Thompson, Christopher 10/2/16
BioTeam Science Gateway for Life Sciences Applications Ari Berman BioTeam, Inc. Marru, Suresh 10/4/16
Reciprocal Net – A Distributed Crystallographic Database Pink, Maren Indiana University Ma, Yu (Marie) 10/12/16
MutPred Service Predrag Radivojac Indiana University-Purdue University Fort Wayne Ma, Yu (Marie) 10/26/16
Developing Large-Scale Distributed Deep Learning Methods for Protein Bioinformatics Jinbo Xu Toyota Technological Institute at Chicago Pamidighantam, Sudhakar 11/8/16
Analysis of Cryo-EM data on Comet and Gordon Andres E Leschziner University of California, San Diego Wong, Mona 12/31/16
Science and Engineering Applications Grid (SEAGrid): A Gateway for Simulation of Molecular and Material Structures and Dynamics, y3 Sudhakar V. Pamidighantam University of Illinois at Urbana-Champaign Chen, Kevin 12/31/16
Simulation for the IceCube telescope data analysis and detector upgrade studies Francis Halzen University of Wisconsin-Madison Rynge, Mats 12/31/16
The MP-Complete Science Gateway Shyue Ping Ong University of California, San Diego Wong, Mona 12/31/16
Deploying Containerized Coastal Model on XSEDE Resources Jian Tao Louisiana State University Wong, Mona 3/8/17
Unidata Cyberinfrastructure in a Cloud Computing Environment Mohan Ramamurthy UCAR/Unidata Marru, Suresh 3/20/17
Providing a Science Gateway to Existing Simulations of Galaxy Cluster Mergers, Y2 Marios Chatzikos University of Kentucky   6/12/17

 

Past projects

Project Name PI Name PI Institution AUSS Staff Assigned End Date
Cyber-enabled investigations of turbulence: studies of mixing and dispersion Pui-kuen Yeung    Zhao, Lan 9/30/12
Social Science Gateway Lars Vilhuber   Uram, Tom 1/25/13
Coupling climate and hydrological models: interoperability through web services Cecelia DeLuca   You, Haihang 3/14/13
Computational Studies of Complex Processes In Biological Macromolecular Systems Benoit Roux   Pamidighantam, Sudhakar 3/31/13
Science Gateway for Systems Biology Workbench Portal Bhanu Rekepalli   Gunathilake, Lahiru 4/6/13
Realizing the Universe on XSEDE: Simulation Support for the Dark Energy Survey August Evrard   Singh, Raminder 6/30/13
Evaluation of Airavata with ADaM Toolkit Manil Maskey   Gunathilake, Lahiru 9/14/13
Providing a Neuroscience Gateway Amitava Majumdar   Schwartz, Terri 11/10/13
Terrain analysis using digital elevation models David Tarboton   Fan, Ye, Liu, Yan 11/15/13
SCEC Petascale Research: An Earthquake System Science Approach to Physics-based Seismic Hazard Research Thomas Jordan University of Southern California   12/31/13
NCGAS Benchmarking and Initial Collaborations Richard LeDuc   Ma, Yu (Marie), Marru, Suresh, Pierce, Marlon 2/13/14
Coupling Climate and Hydrological Models: Interoperability Through Web Services  Cecelia DeLuca     3/14/14
SPLINTER (Structural Protein-Ligand Interactome) Robert Quick Indiana University Marru, Suresh, Singh, Raminder 3/14/14
Einstein Genome Gateway Joseph Hargitai Albert Einstein College of Medicine Pierce, Marlon 3/30/14
High-Resolution Modeling of Hydrodynamic Experiments Borries Demeler University of Texas Health Science Center, San Antonio Singh, Raminder 3/31/14
Science and Engineering Applications Grid (SEAGRID): A Gateway for Simulation of Molecular and Material Structures and Dynamics Sudhakar Pamidighantam University of Illinois at Urbana-Champaign Smith, Warren 3/31/14
CESM portal: A gateway for integrated climate modeling, data analysis, archiving and metadata publishing Matthew Huber Purdue University Marru, Suresh 4/25/14
A RADICAL Use of XSEDE: Large-Scale Atomistic MD Simulations, Multi-Scale Climate Modeling and associated Cyberinfrastructure for XSEDE Resources  Shantenu Jha Rutgers, the State University of New Jersey   6/30/14
The CIPRES Science Gateway: A Resource of Inference of Large Phylogenetic Trees Mark Miller University of California-San Diego   6/30/14
Identification of Mechanism Based Inhibitors of Oncogene Pathways Using High-Performance Docking Yuri Peterson   Rekepalli, Bhanu 6/30/13
Mesoscale Airflow over Mountains: Wave Drag and Orographic Precipitation Dale Durran   Crosby, Lonnie, Wozniak, Jo 6/30/13
Investigation of Flow and Transport in Porous Media Dimitiros Papavassiliou   James, Doug, McLay, Robert, Rosales, Carlos 6/30/13
Science Gateway for Systems Biology Workbench Portal Bhanu Rekepalli   Gunathilake, Lahiru 4/6/13
Realizing the Universe on XSEDE: Simulation Support for the Dark Energy Survey August Evrard   Singh, Raminder 6/30/13

Community Codes:

Project Name PI Name PI Institution Consultant Name Allocation End
Insight into biomolecular structure, dynamics, interactions and energetics from simulation: Finding and exposing problems in the methods and force fields Thomas Cheatham University of Utah Bowen, Anne,Gomez, Antonio 12/31/15
Simulating glacial climate in coastal South Africa: Developing the climate parameters to model a paleoscape during modern human origins  Curtis Marean Arizona State University O'Neal, David 3/31/16
Optimizing the Multi-State Modified Embedded Atom Method Code Addon for LAMMPS on Stampede Srinivasan Srivilliputhur University of North Texas   5/23/16
HPDBSCAN John Cazes University of Texas   6/30/16
Predictability and Data Assimilation of Severe Weather and Tropical Cyclones Fuqing Zhang Pennsylvania State University Eijkhout, Victor 6/30/16
National Flood Interoperability Experiment (NFIE) David Maidment University of Texas at Austin Liu, Si,Liu, Yan 8/17/16
Calculation of Sensitivity Coefficients for Individual Emissions Sources from Three Major Source Sectors in the Continental U.S. using CMAQ-DDM/3D Sarav Arunachalam University of North Carolina, Chapel Hill Evans, Todd 9/30/16
Measuring the Sensitivity of LIGO's Search for Stellar-Mass Coalescing Compact Object Binaries Duncan Brown Syracuse University Pekurovsky, Dmitry 9/30/16
Image Analysis of fMRI Data for Medical Applications Frank Michael Skidmore University of Alabama, Birmingham Brook, Glenn,Burdyshaw, Chad,Horton, Mitch,Yin, Junqi 11/3/16
Adaptive Finite-element Simulations of Complex Industrial Flow Problems Cameron Walter Smith Rensselaer Polytechnic Institute Huang, Lei 12/31/16
Genome Assembly and Annotation of Red Abalone, Yellowtail, Soybean Cyst Nematode and Spiny Softshell Turtle, y2 Andrew J Severin Iowa State University O'Neal, David 12/31/16
Multiscale Climate and Earth System Modeling, y5 Yang Zhang North Carolina State University   12/31/16
Preparing for Checkpoint-Restart in the Exascale Generation Gene Cooperman Northeastern University Vienne, Jerome 12/31/16
Numerical Methods and Models Using Stochastic (Partial) Differential Equations in Biology Christopher Vincent Rackauckas University of California, Irvine Choi, DJ 2/16/17
Finding Real Differences Between Semi-supervised Learning Algorithms Using PJ2 George Rudolph The Citadel Vienne, Jerome 3/16/17
Study of Mechanotransduction Through Proteins Via Molecular Dynamics Simulations Tess J Moon University of Texas at Austin Huang, Lei 3/22/17
Bioinformatics Pipeline and Infrastructure Development for Cancer Genomics Uma Chandran University of Pittsburgh Ropelewski, Alex 3/31/17
Optoelectronic Properties of Dilute Germanium Carbides Mark Wistey University of Notre Dame Wang, Yang 3/31/17